These day, i analyse biosignal like PPG and ECG.
So, i needed to use python package that handles them.
There are two famous tools
They support many biosignals.
I usually use PPG, ECG.
This ppg func. docs is broken down into 3 part; Main, Preprocessing and Analysis.
import neurokit2 as nk # Example 1: Simulate data for event-related analysis # generate virtual ppg by settings ppg = nk.ppg_simulate(duration=20, sampling_rate=1000) # Process data ppg_signals, info = nk.ppg_process(ppg, sampling_rate=1000) epochs = nk.epochs_create(ppg_signals, events=[5000, 10000, 15000], epochs_start=-0.1, epochs_end=1.9) # Analyze analyze_epochs = nk.ppg_analyze(epochs, sampling_rate=1000) analyze_epochs Out: Label Event_Onset ... PPG_Rate_Trend_Quadratic PPG_Rate_Trend_R2 1 1 5000 ... -0.655466 0.842748 2 2 10000 ... -4.537502 0.846765 3 3 15000 ... 0.405473 0.954396 # Example 2: Download the resting-state data data = nk.data("bio_resting_5min_100hz") # Process the data df, info = nk.ppg_process(data["PPG"], sampling_rate=100) # Analyze analyze_df = nk.ppg_analyze(df, sampling_rate=100) analyze_df Out PPG_Rate_Mean HRV_MeanNN HRV_SDNN ... HRV_HFD HRV_KFD HRV_LZC 0 86.401413 694.686775 49.380646 ... 1.834503 2.711044 0.852819
We can easily analyse ppg and other vital using this Neurokit package.
Using other signals in Neurokit is similar to the above.
My project using this neurokit
- Pain prediction using pre/post-op vital